rs319597 chr5:134905755 G>A
- Sequence
tcctgctgtagaaattaatatttt[G/A]gagtaaatggagggaaagttttaa
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HeLa S3 (cervical adenocarcinoma) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- IKZF1_HUMAN ENL_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 1.93 | -0.12 | 1.83 | n/a | No Hit | |||
| ENL_HUMAN | 2.28 | -0.73 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, height, infant head circumference, mitral annular calcium, refractive error
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood