ADASTRA v5.1.3
Search
Browse
Annotate
Help
Downloads
About
rs3202848
chr17:8173337
C
>
T
Sequence
caagactgcaaaatagacaaacag[C/T]aatagcaagactgcaaaatagaca
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
HEK293T (embryonic kidney)
GM12878 (female B-cells lymphoblastoid cell line)
A549 (lung carcinoma)
ASB for transcription factors
IRF5_HUMAN
JUN_HUMAN
ZN785_HUMAN
TADBP_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
Reset
hidden submit
Filter
Get TSV
Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IRF5_HUMAN
n/a
2.92
1.00
3.7·10
-4
1.00
n/a
n/a
JUN_HUMAN
1.22
-0.69
3.2·10
-3
1.00
2.81
n/a
No Hit
ZN785_HUMAN
2.49
-2.14
0.03
1.00
1.00
n/a
n/a
TADBP_HUMAN
1.66
-0.88
0.05
0.99
1.50
n/a
n/a
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP
height
,
ldl cholesterol
,
neuroblastoma (brain cancer)
,
total cholesterol
,
waist hip ratio
GTEx eQTL
Brain_Caudate_basal_ganglia
,
Brain_Cerebellum
,
Brain_Putamen_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Esophagus_Muscularis
,
Muscle_Skeletal
,
Skin_Not_Sun_Exposed_Suprapubic
,
Whole_Blood
Download
Download page in JSON
Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
Please enable JavaScript to continue using this application.
Switch release
SNP set annotation with ANANASTRA
Sort
+/-100bp
log2-scale
log2(Alt/Ref motif p-value)