rs3213423 chr16:72008926 T>G
- Sequence
tgggacgtgtgcgtgtttccgggg[T/G]ctcctgcaaatgctcgtgcgtgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) breast tumor MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- IKZF2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.74 | n/a | 1.00 | n/a | n/a | |||
| ESR1_HUMAN | -2.06 | 2.84 | 2.00 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood