rs321599 chr17:35578726 C>T
- Sequence
gccccgctgaaacagaagagggcc[C/T]ttgtgggctggttttggctagttt
- ASB in cell types
- K562 (myelogenous leukemia) GM19240 (B cells Lymphoblastoid Cell Lines) VCaP (prostate carcinoma)
- ASB for transcription factors
- GABPA_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 0.55 | 1.09 | 1.61 | n/a | No Hit | |||
| CTCF_HUMAN | 0.93 | 0.21 | 1.16 | -2.11 | Concordant |
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Motif analysis
