rs322102 chr12:103966154 C>G
- Sequence
cgcgcacgcaggggtcttttaaat[C/G]ccggccggaatacaaaggccgggg
- ASB in cell types
- 22RV1 (prostate carcinoma) breast tumor MOLT-4 (Adult T acute lymphoblastic leukemia) primary human epidermal keratinocytes
- ASB for transcription factors
- ANDR_HUMAN ESR1_HUMAN SPT5H_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.48 | -0.60 | 1.83 | n/a | No Hit | |||
| ESR1_HUMAN | 2.90 | -0.33 | 1.83 | n/a | No Hit | |||
| SPT5H_HUMAN | 1.07 | -0.30 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid, Whole_Blood