rs322959 chr17:3557863 C>T
- Sequence
ctgccctcggcgccaggcaggcca[C/T]gcccaccagccacagctgcagcac
- ASB in cell types
- HCT-116 (colon carcinoma) primary B-CLL cells MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- BRD4_HUMAN MAX_HUMAN USF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | -0.24 | 2.64 | 2.00 | n/a | n/a | |||
| MAX_HUMAN | 2.21 | -0.02 | 1.25 | n/a | No Hit | |||
| USF1_HUMAN | 1.66 | -0.41 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid