rs324015 chr12:57096317 T>C

Sequence
gctgcaggtgcaggcatgttgggg[T/C]gtgtctcagagcctgaacttccct
ASB in cell types
keratinocytes Detroit 562 (Pharyngeal squamous cell carcinoma) HEK293T (embryonic kidney)
ASB for transcription factors
SNAI2_HUMAN TF65_HUMAN PRDM9_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN 2.52 -1.82 1.4·10-81.00 1.50 n/a No Hit
TF65_HUMAN -0.83 1.90 1.000.01 2.00 n/a No Hit
PRDM9_HUMAN -0.41 2.76 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP asthma irritible bowel syndrome ldl cholesterol total cholesterol total serum ige
GTEx eQTL Artery_Tibial Colon_Sigmoid Esophagus_Mucosa

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