rs327837 chr5:125829498 G>A
- Sequence
tgggccaatgtgtttgctgaggaa[G/A]tgaaacttcgtgcaccacagactt
- ASB in cell types
- THP-1 (acute monocytic leukemia) GM19240 (B cells Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SPI1_HUMAN CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 2.33 | -1.17 | 1.86 | -2.74 | Concordant | |||
| CTCF_HUMAN | 2.05 | -0.99 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 2.12 | -1.25 | 1.00 | n/a | n/a |
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Motif analysis
