rs32880 chr5:82969166 G>A

Sequence
gaagaaaagtcagcatggagacaa[G/A]tgatctcacaacaaggccatcttt
ASB for transcription factors
RFX5_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFX5_HUMAN 2.65 n/a 8.0·10-31.00 3.00 -0.55 Weak Concordant
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Motif analysis

RFX5_HUMAN Weak Concordant
RFX5_HUMAN pic

Genetic associations

GRASP biploar disorder (bipolar schizoaffective disorder),  bipolar disorder, combined control dataset,  hdl cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cortex,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Vagina

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