rs329254 chr7:35025645 T>C

Sequence
aagaattcccaccacttatactga[T/C]gatatagaatatgaatgataataa
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) breast tumor
ASB for transcription factors
ESR1_HUMAN PRGR_HUMAN ARI1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.32 1.20 1.002.7·10-7 2.34 n/a No Hit
PRGR_HUMAN -0.66 1.80 1.000.02 2.00 n/a No Hit
ARI1A_HUMAN 0.13 1.93 0.840.03 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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