rs329255 chr7:35025915 A>C
- Sequence
tgtggaaggttgagaagcactgac[A/C]ttggtcaacagagaaaccaagcaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor
- ASB for transcription factors
- ESR1_HUMAN PRGR_HUMAN ARI1A_HUMAN AHRR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.38 | 2.08 | 2.52 | n/a | No Hit | |||
| PRGR_HUMAN | -0.96 | 1.93 | 2.00 | n/a | No Hit | |||
| ARI1A_HUMAN | -0.14 | 1.66 | 2.00 | n/a | n/a | |||
| AHRR_HUMAN | -1.83 | 2.78 | 2.00 | n/a | n/a | |||
| FOXA1_HUMAN | 0.30 | 1.20 | 2.36 | 0.85 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood