rs329379 chr3:138174902 G>T

Sequence
ccaactttaataagtatagccacc[G/T]cctgggtgtagactcctgcaaaat
ASB in cell types
MDM(monocyte derived macrophages) HL-60 (acute myeloid leukemia) monocyte-derived dendritic cells
ASB for transcription factors
CTCF_HUMAN KLF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.34 0.08 8.0·10-41.00 1.03 3.14 Discordant
KLF1_HUMAN 3.01 -3.10 4.3·10-31.00 1.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

CTCF_HUMAN Discordant
CTCF_HUMAN pic

Genetic associations

GRASP adiponectin levels,  schizophrenia,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

Download