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rs329379 chr3:138174902 G>T

Sequence
ccaactttaataagtatagccacc[G/T]cctgggtgtagactcctgcaaaat
ASB in cell types
MDM(monocyte derived macrophages) HL-60 (acute myeloid leukemia) monocyte-derived dendritic cells
ASB for transcription factors
CTCF_HUMAN KLF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.34 0.08 8.0·10-41.00 1.03 3.14 Discordant
KLF1_HUMAN 3.01 -3.10 4.3·10-31.00 1.00 n/a No Hit
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Motif analysis

CTCF_HUMAN Discordant
CTCF_HUMAN pic

Genetic associations

GRASP adiponectin levels schizophrenia waist hip ratio
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Tibial Breast_Mammary_Tissue Cells_Cultured_fibroblasts Esophagus_Mucosa Esophagus_Muscularis Lung Nerve_Tibial Pituitary Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid

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