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rs33027 chr5:14180634 G>C

Sequence
gatcgcttgaggccaggaatttga[G/C]actagtctgggcaacatagcaaga
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
SMCE1_HUMAN PKNX1_HUMAN SIX4_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCE1_HUMAN n/a 3.33 1.005.8·10-3 2.00 n/a n/a
PKNX1_HUMAN n/a 2.34 1.000.01 2.00 n/a No Hit
SIX4_HUMAN n/a 3.06 1.000.02 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg

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