rs332398 chr1:161566341 C>T
- Sequence
cctgcagaagagatgtacactgtc[C/T]acttttgtttcaacagagggcagt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) gastroesophageal sphincter GM17942 (lymphoblastoid cell) PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN IKZF2_HUMAN ELF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.36 | 0.26 | 1.50 | n/a | No Hit | |||
| RAD21_HUMAN | 1.86 | -0.10 | 1.53 | n/a | n/a | |||
| IKZF2_HUMAN | 2.42 | -2.78 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | 2.82 | n/a | 1.00 | n/a | No Hit | |||
| ZN654_HUMAN | 2.94 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood