ADASTRA v5.1.3
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rs332426
chr19:6801955
G
>
A
Sequence
gcatatgggcacgatgccagcaca[G/A]tgggtgcccgcctcttcctggagg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
J-Lat A72
primary B-CLL cells
CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
SMCA4_HUMAN
SPI1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA4_HUMAN
1.49
1.08
5.3·10
-4
0.98
1.08
n/a
n/a
SPI1_HUMAN
1.16
0.79
0.03
0.96
1.19
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
EMBL-EBI
mean platelet volume
GRASP
anti-tnf treatment response in rheumatoid arthritis (by das-28 score change at 3 months)
,
college completion
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)