rs333423 chr1:174666557 A>G
- Sequence
agtaccaagaagctaaatgggaat[A/G]ttttagaagtttgacccattgttg
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- RARA_HUMAN FOXA2_HUMAN TEAD3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | -3.54 | 1.98 | 1.50 | n/a | No Hit | |||
| FOXA2_HUMAN | -1.42 | 0.94 | 1.25 | n/a | No Hit | |||
| TEAD3_HUMAN | -1.79 | 2.33 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP bipolar disorder, ldl cholesterol, obesity with early age of onset (age >2), total cholesterol, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Brain_Cortex, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood