rs33565 chr5:112969616 C>T

Sequence
gactcatgtgacctgcagctagtg[C/T]gcagttccatgggggaaatggaac
ASB in cell types
CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.65 n/a 1.3·10-51.00 2.00 n/a No Hit
Items per page:
1 – 1 of 1

Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi),  diastolic blood pressure (dbp),  hdl cholesterol,  systolic blood pressure (sbp),  triglycerides
GTEx eQTL Adipose_Visceral_Omentum,  Colon_Transverse,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis

Download