rs336257 chr13:109869805 C>G
- Sequence
tcagacaaaagacagagcggccga[C/G]tgggctcagcggacacacagcgca
- ASB in cell types
- Kelly (neuroblastoma) epithelial cell of prostate pancreas gastroesophageal sphincter
- ASB for transcription factors
- CTCFL_HUMAN CTCF_HUMAN MYCN_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCFL_HUMAN | 3.62 | 0.51 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 2.18 | 0.96 | 1.29 | n/a | No Hit | |||
| MYCN_HUMAN | 2.96 | -5.04 | 1.50 | 4.23 | Discordant | |||
| RAD21_HUMAN | n/a | 2.40 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP birth weight, hdl cholesterol, infant head circumference, ldl cholesterol change with statins, total cholesterol change with statins