rs337655 chr12:92398956 G>T
- Sequence
ttatccggctaggagttaggctgt[G/T]gttttaccatttgctgtagctgtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells primary B-CLL cells
- ASB for transcription factors
- TBX21_HUMAN IKZF2_HUMAN STAG1_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | 2.13 | -1.76 | 1.00 | -1.95 | Weak Concordant | |||
| IKZF2_HUMAN | 2.61 | -2.35 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.35 | -0.69 | 1.07 | n/a | n/a | |||
| BRD4_HUMAN | -0.96 | 1.50 | 3.00 | n/a | n/a |
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Motif analysis
