rs339401 chr19:6737498 G>A
- Sequence
ggatgcgcccggagcagccaccca[G/A]cagcagcaccagaagtagccgctg
- ASB in cell types
- GM02610 (Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) MS-1 (Small cell lung carcinoma) primary B-CLL cells
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN BRD4_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.57 | 0.92 | 1.15 | n/a | No Hit | |||
| ANDR_HUMAN | -1.42 | 3.30 | 2.00 | n/a | No Hit | |||
| BRD4_HUMAN | -0.15 | 2.66 | 2.14 | n/a | n/a | |||
| STAG1_HUMAN | 1.67 | 0.24 | 1.12 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid