rs340139 chr19:6738010 G>C
- Sequence
caaggacggacttcctcttcttga[G/C]ccagggatgtggctcccagccaga
- ASB in cell types
- MDM(monocyte derived macrophages) 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) primary breast cancer
- ASB for transcription factors
- SPI1_HUMAN ANDR_HUMAN ESR1_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 0.30 | 2.57 | 1.90 | n/a | No Hit | |||
| ANDR_HUMAN | n/a | 3.32 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 0.18 | 2.03 | 2.20 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.02 | 1.29 | 1.72 | n/a | No Hit | |||
| CDK9_HUMAN | 0.42 | 1.33 | 1.67 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid