ADASTRA v5.1.3
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rs34076421
chr14:100548081
G
>
C
Sequence
tttgagaacctcagagaagggcag[G/C]gcgggtcttcccaagagtcagtca
ASB in cell types
HEK293 (embryonic kidney)
foreskin keratinocyte
HepG2 (hepatoblastoma)
SK-BR-3 (breast adenocarcinoma)
ASB for transcription factors
RBM25_HUMAN
GLIS1_HUMAN
CTCF_HUMAN
AP2C_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN
3.09
-0.69
4.6·10
-5
1.00
2.00
n/a
n/a
GLIS1_HUMAN
3.06
n/a
4.2·10
-3
1.00
2.00
n/a
n/a
CTCF_HUMAN
2.18
0.47
7.4·10
-3
0.74
1.77
n/a
No Hit
AP2C_HUMAN
2.73
n/a
0.02
1.00
2.00
n/a
No Hit
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Artery_Aorta
,
Artery_Coronary
,
Artery_Tibial
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Breast_Mammary_Tissue
,
Cells_EBV-transformed_lymphocytes
,
Colon_Transverse
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Heart_Atrial_Appendage
,
Liver
,
Lung
,
Nerve_Tibial
,
Ovary
,
Pancreas
,
Pituitary
,
Prostate
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Small_Intestine_Terminal_Ileum
,
Stomach
,
Testis
,
Thyroid
,
Vagina
,
Whole_Blood
Download
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)