rs340839 chr1:213988477 G>A
- Sequence
agaggctcggtcccactgctccct[G/A]caccgcgtaagtatcttcttcttc
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- ZN596_HUMAN ZN341_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN596_HUMAN | 0.94 | n/a | 2.00 | n/a | n/a | |||
| ZN341_HUMAN | 2.61 | -4.84 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP fasting blood glucose, hdl cholesterol, microalbuminuria, obesity with early age of onset (age >2), urinary albumin-to-creatinine ratio
GTEx eQTL Adrenal_Gland, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Colon_Transverse, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Pancreas, Pituitary, Prostate, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid