rs341323 chr5:112492538 C>T
- Sequence
gtagcagcagtgagagggcgcaaa[C/T]ccccaagtctaccagaggagagag
- ASB in cell types
- T47D (invasive ductal carcinoma) GM12878 (female B-cells lymphoblastoid cell line) HeLa (cervical adenocarcinoma) glioblastoma cells
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.01 | 2.25 | 1.56 | n/a | No Hit | |||
| RAD21_HUMAN | -0.32 | 1.93 | 1.92 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Skin_Sun_Exposed_Lower_leg