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rs341809 chr8:49129998 G>A

Sequence
agtctagtcgtatgacataattac[G/A]tcattgggaacttctggatttcaa
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
ATF2_HUMAN CREB1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF2_HUMAN 4.75 n/a 1.6·10-161.00 1.00 -0.05 Weak Concordant
CREB1_HUMAN 2.81 -1.61 1.7·10-61.00 2.67 -4.88 Concordant
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Motif analysis

ATF2_HUMAN Weak Concordant
ATF2_HUMAN pic

Genetic associations

GRASP hdl cholesterol waist hip ratio years of education
GTEx eQTL Adipose_Visceral_Omentum Artery_Tibial Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellum Brain_Cortex Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Muscle_Skeletal Nerve_Tibial Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid

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