rs342518 chr3:42490447 G>A

Sequence
gggcaggatctagaataaagagga[G/A]gcgagagaggcgtgcatagctgag
ASB in cell types
T47D (invasive ductal carcinoma)
ASB for transcription factors
FOXA1_HUMAN GRHL2_HUMAN ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.15 1.61 1.004.1·10-4 1.62 n/a No Hit
GRHL2_HUMAN -0.33 1.13 1.000.02 1.30 n/a No Hit
ESR1_HUMAN -0.53 1.36 1.000.02 2.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Thyroid,  Whole_Blood

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