rs34265631 chr2:119760017 C>T
- Sequence
ctcaggactcctgggtcccagggg[C/T]cggaattgggcctgagcgggagag
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- STAG1_HUMAN GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 1.90 | 1.22 | 1.05 | n/a | n/a | |||
| GCR_HUMAN | 1.15 | 0.39 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Spleen