ADASTRA v5.1.3
Search
Browse
Annotate
Help
Downloads
About
rs342931
chr3:146577772
C
>
T
Sequence
cacaaaattgatgtgttttatttc[C/T]cagattacagaaagaacaaaatga
ASB in cell types
GM12892 (female B-cells lymphoblastoid cell line)
MS-1 (Small cell lung carcinoma)
GM18951 (B-cells Lymphoblastoid Cell Lines)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+4 others)
Selected columns
Reset
hidden submit
Filter
Get TSV
Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
GM12892 (female B-cells lymphoblastoid cell line)
0.05
1.13
1.00
3.7·10
-3
1.00
MS-1 (Small cell lung carcinoma)
-0.84
0.88
1.00
8.1·10
-3
1.00
GM18951 (B-cells Lymphoblastoid Cell Lines)
-0.59
1.37
1.00
0.01
1.00
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
2 hour glucose
,
ldl cholesterol
,
refractive error
,
total cholesterol
GTEx eQTL
Adipose_Subcutaneous
,
Brain_Frontal_Cortex_BA9
,
Cells_Cultured_fibroblasts
Download
Download page in JSON
Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
Please enable JavaScript to continue using this application.
Switch release
SNP set annotation with ANANASTRA
Sort
+/-100bp
log2-scale