ADASTRA v5.1.3
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rs343360
chr1:42214656
G
>
T
Sequence
ggaaggtaagtcaaaacttgggaa[G/T]aatgtgggtgaatttcctgttttg
ASB in cell types
BEAS-2B (bronchial epithelium)
HepG2 (hepatoblastoma)
CFPAC-1(pancreatic ductal adenocarcinoma)
HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
GCR_HUMAN
TEAD3_HUMAN
TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GCR_HUMAN
2.16
-0.28
1.3·10
-5
1.00
1.00
n/a
No Hit
TEAD3_HUMAN
2.81
-2.46
3.8·10
-4
1.00
1.00
n/a
n/a
TCF21_HUMAN
-4.65
2.55
1.00
0.02
2.00
n/a
n/a
Items per page:
5
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
adiponectin levels
,
chronic kidney disease
,
fasting insulin
,
height
,
homa-b
,
obsessive-compulsive disorder (ocd)
,
waist hip ratio
GTEx eQTL
Colon_Transverse
,
Esophagus_Mucosa
,
Nerve_Tibial
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)