rs344071 chr3:156826795 C>T
- Sequence
caggaaagtcttaggatgtgaact[C/T]ccgccttcacctgcccctgacctg
- ASB in cell types
- 22RV1 (prostate carcinoma) GM02255 (Lymphoblastoid Cell Lines) HEK293T (embryonic kidney) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- ELF1_HUMAN ANDR_HUMAN CTCF_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ELF1_HUMAN | -0.27 | 2.65 | 1.75 | 7.16 | Concordant | |||
| ANDR_HUMAN | -1.66 | 2.63 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.01 | 1.32 | 1.19 | -0.14 | Weak Discordant | |||
| STAG1_HUMAN | 0.07 | 1.49 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Whole_Blood