rs34494202 chr1:12552838 G>A
- Sequence
gcctccttccctggccttggggtg[G/A]cctccgggccttcggtctgcctct
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NFIC_HUMAN RARA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | -1.87 | 1.87 | 1.00 | n/a | No Hit | |||
| RARA_HUMAN | -2.22 | 2.19 | 1.00 | 0.79 | Weak Concordant |
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Motif analysis
