rs34541537 chr19:58401370 C>T
- Sequence
gggactctggtcgccataacaact[C/T]atcacgcctgtgctgcgcgcgcgc
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) WA01 (H1, human embryonic stem cells) CAL51(Breast carcinoma)
- ASB for transcription factors
- CREB1_HUMAN RBM25_HUMAN GATD1_HUMAN NRF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.23 | -0.59 | 1.40 | n/a | No Hit | |||
| RBM25_HUMAN | 1.80 | -3.48 | 3.00 | n/a | n/a | |||
| GATD1_HUMAN | 2.76 | -2.64 | 1.00 | n/a | n/a | |||
| NRF1_HUMAN | 1.28 | -0.77 | 1.44 | -1.12 | Weak Concordant | |||
| KMT2C_HUMAN | 2.38 | -2.07 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood