rs34589926 chr18:53380306 T>G
- Sequence
aattacacccttcttacatactgg[T/G]agaaaaccctcattctctcttgct
- ASB in cell types
- epithelial cell of prostate K562 (myelogenous leukemia) GM19239 (male B-cells lymphoblastoid cell line) GM19193 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN NRF1_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.28 | 1.94 | 1.75 | n/a | No Hit | |||
| NRF1_HUMAN | -1.40 | 2.20 | 1.25 | n/a | No Hit | |||
| STAG1_HUMAN | -1.54 | 1.13 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 0.93 | 1.77 | 1.29 | n/a | n/a |
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