rs34592370 chr17:35942807 G>T

Sequence
ctacattcctttctctttaggcgc[G/T]ctaagatagggaagctaaaagcag
ASB in cell types
K562 (myelogenous leukemia) embryonic stem cells derived definitive endoderm
ASB for transcription factors
SOX6_HUMAN GATA6_HUMAN GATA4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SOX6_HUMAN 2.26 n/a 2.6·10-31.00 2.00 n/a n/a
GATA6_HUMAN 1.75 0.36 3.4·10-31.00 1.00 n/a No Hit
GATA4_HUMAN 2.43 -1.98 3.6·10-31.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_EBV-transformed_lymphocytes,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Small_Intestine_Terminal_Ileum,  Whole_Blood

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