rs34646 chr5:72817234 C>T
- Sequence
cgggtctcctgcgtccgcacacag[C/T]gcccatcgtccttacatgcagctt
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) CD14+ monocytes HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- ANDR_HUMAN STAT1_HUMAN TCF21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.90 | n/a | 2.50 | n/a | No Hit | |||
| STAT1_HUMAN | 2.63 | -4.96 | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | -2.62 | 2.22 | 5.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood