rs34647 chr5:72816603 C>G

Sequence
gcgaccgccgccgaatgttcccgc[C/G]gcgggctccgccccccggccaatc
ASB in cell types
22RV1 (prostate carcinoma) thymus-derived CD34- cells CD14+ monocytes
ASB for transcription factors
ANDR_HUMAN BC11B_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN n/a 3.49 1.003.7·10-5 2.50 n/a No Hit
BC11B_HUMAN n/a 2.91 1.000.01 2.50 n/a n/a
STAT1_HUMAN -0.46 2.12 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration,  advanced age-related macular degeneration (geographic atrophy),  hdl cholesterol,  parkinsons disease,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Muscle_Skeletal,  Nerve_Tibial

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