rs346525 chr19:43755631 A>G
- Sequence
cgctccagggtcgaaaatttaaac[A/G]cacgtgggcggagtcttgcgcgcg
- ASB in cell types
- K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- MGAP_HUMAN IKZF1_HUMAN MAX_HUMAN BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MGAP_HUMAN | n/a | 1.43 | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | n/a | 2.23 | 2.00 | n/a | No Hit | |||
| MAX_HUMAN | 0.06 | 2.27 | 1.60 | 4.57 | Concordant | |||
| BRD4_HUMAN | 0.01 | 1.95 | 2.00 | n/a | n/a | |||
| NELFE_HUMAN | -0.77 | 1.51 | 2.00 | n/a | n/a |
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Motif analysis
