rs34826769 chr5:6713027 G>A
- Sequence
acggccacgctgccctgcgcacgc[G/A]cagcgcggctcaggcggcagcccg
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) primary human Th1 T cells HepG2 (hepatoblastoma)
- ASB for transcription factors
- NRF1_HUMAN MEIS2_HUMAN TYY1_HUMAN MNT_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.50 | -4.68 | 2.50 | -9.25 | Concordant | |||
| MEIS2_HUMAN | 1.97 | n/a | 1.50 | n/a | No Hit | |||
| TYY1_HUMAN | 2.04 | -0.68 | 1.33 | n/a | No Hit | |||
| MNT_HUMAN | -0.47 | 2.52 | 1.67 | n/a | n/a | |||
| NELFE_HUMAN | -1.01 | 1.70 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid