rs34911581 chr22:30417143 T>C

Sequence
aatgttaaagagaataaactgaca[T/C]gtaaactgtctgggacatgttaaa
ASB in cell types
22RV1 (prostate carcinoma) VCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 1.09 0.21 3.9·10-41.00 2.00 n/a No Hit
ANDR_HUMAN 1.82 0.27 2.7·10-31.00 1.94 -2.04 Concordant
Items per page:
1 – 2 of 2

Motif analysis

ANDR_HUMAN Concordant
ANDR_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Whole_Blood

Download