rs35001216 chr5:157690578 C>A
- Sequence
gaagaggcgggcggcagcaggagc[C/A]gcaggtcgggcctgaactgccgct
- ASB in cell types
- MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.70 | -0.16 | 1.33 | -2.01 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Amygdala, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg