rs35090101 chr19:35740818 T>C
- Sequence
tccacgcggcccctatcccgcctc[T/C]ccagccatatccattcgctgttgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma) TF-1 (erythroleukemia) CD14+ monocytes
- ASB for transcription factors
- IKZF2_HUMAN ANDR_HUMAN SMC3_HUMAN TEAD4_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -4.28 | 3.97 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.84 | n/a | 2.00 | n/a | No Hit | |||
| SMC3_HUMAN | 2.03 | -0.61 | 2.00 | n/a | n/a | |||
| TEAD4_HUMAN | -4.97 | 2.88 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 1.98 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Amygdala, Brain_Cerebellum, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid