rs35121828 chr7:23595366 G>A
- Sequence
tgtgaaaattgtcagaatcaaaat[G/A]gagtcacttgtgttaaaaacaaaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- SRF_HUMAN ZN592_HUMAN NFAC3_HUMAN TBX21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SRF_HUMAN | -1.07 | 1.07 | 1.00 | n/a | No Hit | |||
| ZN592_HUMAN | 2.22 | n/a | 3.00 | n/a | n/a | |||
| NFAC3_HUMAN | -2.00 | 2.00 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | -3.11 | 2.17 | 1.50 | n/a | No Hit | |||
| MEF2B_HUMAN | n/a | 1.28 | 2.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood