rs35155825 chr16:1983660 C>A

Sequence
agggaggggacaagagcccaggac[C/A]ctagcgcgcgccgcaatctgtgcg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
NRF1_HUMAN RFX1_HUMAN PF21A_HUMAN MNT_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN -3.03 1.76 1.006.6·10-4 2.00 -0.53 Weak Discordant
RFX1_HUMAN n/a 0.48 1.000.02 2.50 n/a No Hit
PF21A_HUMAN n/a 2.69 1.000.03 2.00 n/a n/a
MNT_HUMAN -0.70 1.50 1.000.03 2.00 n/a n/a
KDM1A_HUMAN 0.39 1.44 1.000.04 2.00 n/a n/a
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Motif analysis

NRF1_HUMAN Weak Discordant
NRF1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Cells_EBV-transformed_lymphocytes,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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