rs35321028 chr1:205321837 C>T
- Sequence
gcccattggcctgctcgacggcgg[C/T]gcgtgaccacggccgtccacattg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) K562 (myelogenous leukemia) MCF10A (breast epithelial cells) primary B-CLL cells
- ASB for transcription factors
- RAD51_HUMAN USF1_HUMAN TEAD4_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD51_HUMAN | 3.89 | -3.77 | 1.00 | n/a | n/a | |||
| USF1_HUMAN | 2.68 | -1.74 | 1.25 | -5.31 | Concordant | |||
| TEAD4_HUMAN | 2.89 | -2.55 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.70 | -0.47 | 1.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Hippocampus, Esophagus_Mucosa, Nerve_Tibial, Thyroid, Whole_Blood