rs35507273 chr1:222465593 A>G
- Sequence
cccgccggggccgagagcgccgcc[A/G]gcgtggcccgaatgctagccgttt
- ASB in cell types
- HepG2 (hepatoblastoma) A549 (lung carcinoma) HeLa S3 (cervical adenocarcinoma) pancreas
- ASB for transcription factors
- CTCF_HUMAN MAX_HUMAN RBM25_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.83 | 0.70 | 1.34 | n/a | No Hit | |||
| MAX_HUMAN | 1.22 | 0.35 | 1.15 | n/a | No Hit | |||
| RBM25_HUMAN | -5.41 | 3.23 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.32 | 0.70 | 1.56 | n/a | n/a | |||
| CLOCK_HUMAN | 3.24 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
