rs35599105 chr6:117482586 C>A
- Sequence
tcctctaggggccgacgtgcgggg[C/A]ggggcggggccgggcgggagacgc
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor
- ASB for transcription factors
- TYY1_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 2.33 | n/a | 2.00 | n/a | No Hit | |||
| EGR1_HUMAN | 0.43 | 1.67 | 1.33 | -0.11 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood