rs35638349 chr7:17439219 A>C
- Sequence
ggaaaaccccacccctgtgattca[A/C]ttacctcctgctgggttcctccca
- ASB in cell types
- iPSC (induced pluripotent stem cells) CD4+ T cells from blood ESO-26 (Gastroesophageal junction adenocarcinoma) YCC3 (gastric adenocarcinoma)
- ASB for transcription factors
- DUX4_HUMAN NFKB1_HUMAN GATA6_HUMAN HNF4A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| DUX4_HUMAN | 3.19 | n/a | 1.00 | -3.01 | Concordant | |||
| NFKB1_HUMAN | -2.29 | 2.69 | 1.00 | n/a | No Hit | |||
| GATA6_HUMAN | -2.06 | 2.33 | 1.00 | n/a | No Hit | |||
| HNF4A_HUMAN | n/a | 2.71 | 3.00 | n/a | No Hit |
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Motif analysis
