rs35719 chr12:100573882 C>A
- Sequence
agcctgagggctccaggagccccc[C/A]gctctctgaggccccgaagctgag
- ASB in cell types
- keratinocytes HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN RBM25_HUMAN ESR1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.28 | n/a | 1.50 | n/a | No Hit | |||
| RBM25_HUMAN | 2.06 | n/a | 3.00 | n/a | n/a | |||
| ESR1_HUMAN | 0.98 | -0.20 | 1.90 | n/a | No Hit | |||
| JUN_HUMAN | 0.39 | 1.49 | 1.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.94 | 0.30 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Liver, Nerve_Tibial, Pancreas, Testis, Thyroid