rs35842909 chr15:75758362 T>C
- Sequence
taacttccactgtctttcctaatg[T/C]cttaattcggtcctcagttaaact
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) LNCaP (prostate carcinoma) PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN BRD4_HUMAN ZN335_HUMAN SRBP2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.44 | 1.48 | 1.33 | n/a | No Hit | |||
| BRD4_HUMAN | 1.85 | n/a | 1.00 | n/a | n/a | |||
| ZN335_HUMAN | 2.82 | -5.34 | 2.00 | 2.47 | Discordant | |||
| SRBP2_HUMAN | 1.94 | n/a | 1.00 | n/a | No Hit | |||
| SRBP1_HUMAN | 2.77 | -2.44 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood