rs35847236 chr22:29470605 T>G
- Sequence
gtcgcctgcagggggcgctgttgc[T/G]ggcgcgattctatcaagcgcagag
- ASB in cell types
- erythroid progenitors OCI-LY1 (diffuse large B-cell lymphoma) Kelly (neuroblastoma) T-ALL cells from peripheral blood
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN MYCN_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.29 | 0.60 | 1.43 | n/a | No Hit | |||
| RAD21_HUMAN | 1.68 | -1.02 | 1.08 | n/a | n/a | |||
| MYCN_HUMAN | 2.51 | -4.74 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Uterus, Whole_Blood